ample.parsers.psipred_parser module
A parser object for Psipred Ss2 files
-
class
PsipredSs2Parser
(ss2file=None)[source]
Bases: object
Parser for psipred ss2 file
-
checkContent
()[source]
Check the secondary structure composition
-
check_content
()[source]
Check the secondary structure composition
-
getSecondaryStructure
()[source]
Get the secondary structure content
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parse
(ss2file)[source]
Parse a secondary structure file
Parameters: | ss2file (str) – The path to the Psipred ss2 file |
-
secondary_structure
The secondary structure
Returns: | The secondary structure one-letter codes |
Return type: | str |