ample.ensembler.cluster_util module¶

Cluster utility module

import_cluster(cluster_models)[source]¶

Import a cluster

Parameters:	cluster_models : list, tuple A list of models in a single cluster
Returns:	list A list containing the cluster information

random_cluster(cluster_method, max_cluster_size, models, num_clusters)[source]¶

Cluster decoys using madness

Parameters:	cluster_method : str The method to be used to cluster the decoys max_cluster_size : int The maximum number of decoys per cluster models : list A list containing structure decoys num_clusters : int The number of clusters to produce
Returns:	list A list containing the clusters
Raises:	RuntimeError Cannot ramdonly cluster so few decoys RuntimeError Cannot find random clusters