.. _references:

Reference List
--------------

.. list-table:: If you use AMPLE, please cite:
   :widths: 1200, 10, 10, 10
   :class: table-hover

   * - Bibby J, Keegan RM, Mayans O, Winn MD & Rigden DJ (2012). AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models. *Acta Cryst. D* **68**, 1622-1631.
     - .. cssclass:: btn btn-primary btn-sm btn-reference
          
          `CrossRef`__

     - .. cssclass:: btn btn-default btn-sm btn-reference
          
          `PubMed`__

     - .. cssclass:: btn btn-primary btn-sm btn-reference

          `BibTex`__


.. list-table:: Depending on the features you use, please also cite some or all of the following:
   :widths: 1200, 10, 10, 10
   :class: table-hover

   * - Bibby J, Keegan RM, Mayans O, Winn MD & Rigden DJ (2013). Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement. *Acta Cryst. D* **69**, 2194-2201.
     - .. cssclass:: btn btn-primary btn-sm btn-reference
          
          `CrossRef`__

     - .. cssclass:: btn btn-default btn-sm btn-reference
          
          `PubMed`__

     - .. cssclass:: btn btn-primary btn-sm btn-reference

          `BibTex`__

   * - Keegan RM, Bibby J, Thomas JMH, Xu D, Zhang Y, Mayans O, Winn MD & Rigden DJ (2015). Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models. *Acta Cryst. D* **71**, 338-343.
     - .. cssclass:: btn btn-primary btn-sm btn-reference
          
          `CrossRef`__

     - .. cssclass:: btn btn-default btn-sm btn-reference
          
          `PubMed`__

     - .. cssclass:: btn btn-primary btn-sm btn-reference

          `BibTex`__

   * - Simkovic F, Thomas JMH, Keegan RM, Winn MD, Mayans O & Rigden DJ (2016). Residue contacts predicted by evolutionary covariance extend the application of ab initio Molecular Replacement to larger and more challenging protein folds. *IUCrJ* **4**, 259-270.
     - .. cssclass:: btn btn-primary btn-sm btn-reference
          
          `CrossRef`__

     - .. cssclass:: btn btn-default btn-sm btn-reference
          
          `PubMed`__

     - .. cssclass:: btn btn-primary btn-sm btn-reference

          `BibTex`__

   * - Thomas JMH, Keegan RM, Bibby J, Winn MD, Mayans O & Rigden DJ (2015). Routine phasing of coiled-coil protein crystal structures with AMPLE. *IUCrJ* **2**, 198-206.
     - .. cssclass:: btn btn-primary btn-sm btn-reference
          
          `CrossRef`__

     - .. cssclass:: btn btn-default btn-sm btn-reference
          
          `PubMed`__

     - .. cssclass:: btn btn-primary btn-sm btn-reference

          `BibTex`__


.. KEEP ALL LINKS AT THE BOTTOM, TABLE IS ALREADY MESSY ENOUGH
   PLEASE ALSO KEEP EVERYTHING IN ORDER, THE ANONYMOUS LINKS
   DON'T WORK OTHERWISE.

..     Bibby et al., 2012
__ https://doi.org/10.1107/s0907444912039194
__ http://www.ncbi.nlm.nih.gov/pubmed/23151627
__ _static/bibby2012.bib
..     Bibby et al., 2013
__ https://doi.org/10.1107/s0907444913018453
__ https://www.ncbi.nlm.nih.gov/pubmed/24189230
__ _static/bibby2013.bib
..     Keegan et al, 2015
__ https://doi.org/10.1107/s1399004714025784
__ https://www.ncbi.nlm.nih.gov/pubmed/25664744 
__ _static/keegan2015.bib
..     Simkovic et al, 2016 
__ https://doi.org/10.1107/s2052252516008113
__ https://www.ncbi.nlm.nih.gov/pubmed/27437113
__ _static/simkovic2016.bib
..     Thomas et al, 2015
__ https://doi.org/10.1107/s2052252515002080
__ http://www.ncbi.nlm.nih.gov/pubmed/25866657
__ _static/thomas2015.bib