ample.ensembler.homologs module
Ensembler module for homolog structures
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class
HomologEnsembler
(**kwargs)[source]
Bases: ample.ensembler._ensembler.Ensembler
Ensemble creator using on multiple distant homologous structures
Methods
edit_side_chains (raw_ensemble[, …]) |
Mutate side chains for the supplied all-atom ensembles |
generate_ensembles |
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generate_ensembles_from_amoptd |
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superpose_models |
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generate_ensembles
(models, alignment_file=None, ensembles_directory=None, homolog_aligner=None, nproc=None, percent_truncation=None, side_chain_treatments=[‘polyAla’], truncation_method=None)[source]
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generate_ensembles_from_amoptd
(models, amoptd)[source]
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align_gesamt
(models, gesamt_exe=None, work_dir=None)[source]
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align_mustang
(models, mustang_exe=None, work_dir=None)[source]