Spickerer
(spicker_exe=None, run_dir=None)[source]¶Bases: object
Methods
cluster (models[, num_clusters, …]) |
Cluster decoys using spicker |
create_input_files (models[, score_type, …]) |
jmht |
process_log ([logfile]) |
Read the spicker str.txt file and return a list of SpickerResults for each cluster. |
results_summary () |
Summarise the spicker results |
get_length |
cluster
(models, num_clusters=10, max_cluster_size=200, run_dir=None, score_type=’rmsd’, score_matrix=None, nproc=1)[source]¶Cluster decoys using spicker
Parameters: |
|
---|---|
Returns: |
|
Raises: |
|
create_input_files
(models, score_type=’rmsd’, score_matrix=None)[source]¶jmht Create the input files required to run spicker (See notes in spicker.f FORTRAN file for a description of the required files)