Bases: object
# Extract the first chain from the nativePdb
# Create a residueSequenceMap and see if the residues match
# If not use keep_matching to create a nativePdb that has the correct residue sequence`
# Run Maxcluster to compare the models to the native
Methods
compareDirectory |
|
compareModelList |
|
compareSingle |
|
maxsubSorted |
|
parseLogDirectory |
|
parseLogSingleRmsd |
|
parseLogSingleTm |
|
rmsd |
|
runCompareDirectory |
|
run_compare_model_list |
|
tm |
|
tmSorted |
|
-
compareDirectory
(nativePdbInfo=None, resSeqMap=None, modelsDirectory=None, workdir=None)[source]
-
compareModelList
(nativePdbInfo=None, resSeqMap=None, models=None, workdir=None)[source]
-
compareSingle
(nativePdb=None, modelPdb=None, sequenceIndependant=True, rmsd=False, workdir=None)[source]
-
maxsubSorted
(reverse=True)[source]
-
parseLogDirectory
(logfile=None)[source]
-
parseLogSingleRmsd
(logfile=None)[source]
-
parseLogSingleTm
(logfile=None)[source]
-
prepareNative
(nativePdbInfo=None, resSeqMap=None)[source]
do stuff
-
rmsd
(model)[source]
-
runCompareDirectory
(nativePdb=None, modelsDirectory=None, logfile=None)[source]
-
run_compare_model_list
(nativePdb=None, models=None, logfile=None)[source]
-
tm
(model)[source]
-
tmSorted
(reverse=True)[source]