.. _references: Reference List -------------- .. list-table:: If you use AMPLE, please cite: :widths: 1200, 10, 10, 10 :class: table-hover * - Bibby J, Keegan RM, Mayans O, Winn MD & Rigden DJ (2012). AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models. *Acta Cryst. D* **68**, 1622-1631. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/bibby2012.bib>`_ .. list-table:: Depending on the features you use, please also cite some or all of the following: :widths: 1200, 10, 10, 10 :class: table-hover * - Bibby J, Keegan RM, Mayans O, Winn MD & Rigden DJ (2013). Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement. *Acta Cryst. D* **69**, 2194-2201. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/bibby2013.bib>`_ * - Keegan RM, Bibby J, Thomas JMH, Xu D, Zhang Y, Mayans O, Winn MD & Rigden DJ (2015). Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models. *Acta Cryst. D* **71**, 338-343. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/keegan2015.bib>`_ * - Rigden DJ, Thomas JMH, Simkovic F, Simpkin A, Winn MD, Mayans O & Keegan RM(2018). Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in AMPLE. *Acta Cryst. D* **74**, 183-193. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/rigden2018.bib>`_ * - Simkovic F, Thomas JMH, Keegan RM, Winn MD, Mayans O & Rigden DJ (2016). Residue contacts predicted by evolutionary covariance extend the application of ab initio Molecular Replacement to larger and more challenging protein folds. *IUCrJ* **4**, 259-270. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/simkovic2016.bib>`_ * - Thomas JMH, Keegan RM, Bibby J, Winn MD, Mayans O & Rigden DJ (2015). Routine phasing of coiled-coil protein crystal structures with AMPLE. *IUCrJ* **2**, 198-206. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/thomas2015.bib>`_ * - Thomas JMH, Simkovic F, Keegan R, Mayans O, Zhang C, Zhang Y & Rigden DJ (2017). Approaches to ab initio molecular replacement of α-helical transmembrane proteins. *Acta Cryst. D* **73**, 985-996. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/thomas2017.bib>`_ * - Simpkin AJ, Thomase JMH, Simkovic F, Keegan RM, Rigden DJ (2019). Molecular Replacement using structure predictions from databases. *Acta Cryst. D* **75**. - .. cssclass:: btn btn-primary btn-sm btn-reference `CrossRef `_ - .. cssclass:: btn btn-default btn-sm btn-reference `PubMed `_ - .. cssclass:: btn btn-primary btn-sm btn-reference `BibTex <_static/simpkin2019.bib>`_