Reference List

If you use AMPLE, please cite:
Bibby J, Keegan RM, Mayans O, Winn MD & Rigden DJ (2012). AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models. Acta Cryst. D 68, 1622-1631.

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Depending on the features you use, please also cite some or all of the following:
Bibby J, Keegan RM, Mayans O, Winn MD & Rigden DJ (2013). Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement. Acta Cryst. D 69, 2194-2201.

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Keegan RM, Bibby J, Thomas JMH, Xu D, Zhang Y, Mayans O, Winn MD & Rigden DJ (2015). Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models. Acta Cryst. D 71, 338-343.

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Rigden DJ, Thomas JMH, Simkovic F, Simpkin A, Winn MD, Mayans O & Keegan RM(2018). Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in AMPLE. Acta Cryst. D 74, 183-193.

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Simkovic F, Thomas JMH, Keegan RM, Winn MD, Mayans O & Rigden DJ (2016). Residue contacts predicted by evolutionary covariance extend the application of ab initio Molecular Replacement to larger and more challenging protein folds. IUCrJ 4, 259-270.

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Thomas JMH, Keegan RM, Bibby J, Winn MD, Mayans O & Rigden DJ (2015). Routine phasing of coiled-coil protein crystal structures with AMPLE. IUCrJ 2, 198-206.

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Thomas JMH, Simkovic F, Keegan R, Mayans O, Zhang C, Zhang Y & Rigden DJ (2017). Approaches to ab initio molecular replacement of α-helical transmembrane proteins. Acta Cryst. D 73, 985-996.

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Simpkin AJ, Thomase JMH, Simkovic F, Keegan RM, Rigden DJ (2019). Molecular Replacement using structure predictions from databases. Acta Cryst. D 75.

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